| DNA viruses |
| Anelloviridae | Alphatorquevirus | TTV | | | | | | |
| Betatorquevirus | TTMV | | | | | | |
| Gammatorquevirus | TTMDV | | | | | | |
| Parvoviridae | Erythroparvovirus | Parvovirus B19 | | | | | | |
| Bocaparvovirus | Human bocavirus | | | | | | |
| Polyomaviridae | Alphapolyomavirus | MCPyV | | | | | | |
| Betapolyomavirus | JC virus | | | | | | |
| BK virus | | | | | | |
| Papillomaviridae | Alphapapillomavirus | HPV-16 | | | | | | |
| HPV-18 | | | | | | |
| HPV-6 | | | | | | |
| HPV-11 | | | | | | |
| Betapapillomavirus | HPV-5 | | | | | | |
| HPV-8 | | | | | | |
| Gammapapillomavirus | Cutaneous HPVs | | | | | | |
| Mupapillomavirus | HPV-1 | | | | | | |
| Nupapillomavirus | HPV-41 | | | | | | |
| Adenoviridae | Mastadenovirus | HAdV-A | | | | | | |
| HAdV-B | | | | | | |
| HAdV-C | | | | | | |
| HAdV-D | | | | | | |
| HAdV-E | | | | | | |
| HAdV-F | | | | | | |
| HAdV-G | | | | | | |
| Hepadnaviridae | Orthohepadnavirus | HBV | | | | | | |
| Orthoherpesviridae | Simplexvirus | HSV-1 | | | | | | |
| HSV-2 | | | | | | |
| Varicellovirus | VZV | | | | | | |
| Cytomegalovirus | HCMV | | | | | | |
| Roseolovirus | HHV-6A | | | | | | |
| HHV-6B | | | | | | |
| HHV-7 | | | | | | |
| Lymphocryptovirus | EBV | | | | | | |
| Rhadinovirus | KSHV (HHV-8) | | | | | | |
| Poxviridae | Orthopoxvirus | Variola virus | | | | | | |
| Mpox virus | | | | | | |
| Vaccinia virus | | | | | | |
| Molluscipoxvirus | Molluscum contagiosum virus | | | | | | |
| Parapoxvirus | Orf virus | | | | | | |
| Yatapoxvirus | Tanapox virus | | | | | | |
| (+)ssRNA viruses |
| Astroviridae | Mamastrovirus | HAstV-1 | | | | | | |
| HAstV-2 | | | | | | |
| HAstV-3 | | | | | | |
| HAstV-4 | | | | | | |
| HAstV-5 | | | | | | |
| HAstV-6 | | | | | | |
| HAstV-7 | | | | | | |
| HAstV-8 | | | | | | |
| Picornaviridae | Enterovirus | Poliovirus | | | | | | |
| Rhinovirus A | | | | | | |
| Rhinovirus B | | | | | | |
| Rhinovirus C | | | | | | |
| EV-A71 | | | | | | |
| EV-D68 | | | | | | |
| Hepatovirus | HAV | | | | | | |
| Parechovirus | HPeV-1 | | | | | | |
| HPeV-3 | | | | | | |
| Kobuvirus | Aichi virus | | | | | | |
| Hepeviridae | Paslahepevirus | HEV genotype 1 | | | | | | |
| HEV genotype 2 | | | | | | |
| HEV genotype 3 | | | | | | |
| HEV genotype 4 | | | | | | |
| Caliciviridae | Norovirus | Norovirus GI | | | | | | |
| Norovirus GII | | | | | | |
| Sapovirus | Human sapovirus | | | | | | |
| Matonaviridae | Rubivirus | Rubella virus | | | | | | |
| Togaviridae | Alphavirus | CHIKV | | | | | | |
| EEEV | | | | | | |
| WEEV | | | | | | |
| VEEV | | | | | | |
| Mayaro virus | | | | | | |
| Flaviviridae | Orthoflavivirus | Dengue virus | | | | | | |
| Zika virus | | | | | | |
| Yellow fever virus | | | | | | |
| West Nile virus | | | | | | |
| JEV | | | | | | |
| TBEV | | | | | | |
| Hepacivirus | HCV | | | | | | |
| Pegivirus | HPgV (non-pathogenic) | | | | | | |
| Coronaviridae | Alphacoronavirus | HCoV-229E | | | | | | |
| HCoV-NL63 | | | | | | |
| Betacoronavirus | SARS-CoV-2 | | | | | | |
| MERS-CoV | | | | | | |
| HCoV-OC43 | | | | | | |
| HCoV-HKU1 | | | | | | |
| (−)ssRNA viruses |
| Bornaviridae | Orthobornavirus | BoDV-1 | | | | | | |
| Orthomyxoviridae | Alphainfluenzavirus | Influenza A (H1N1) | | | | | | |
| Influenza A (H3N2) | | | | | | |
| Influenza A (H5N1) | | | | | | |
| Betainfluenzavirus | Influenza B (Victoria) | | | | | | |
| Influenza B (Yamagata) | | | | | | |
| Gammainfluenzavirus | Influenza C | | | | | | |
| Paramyxoviridae | Morbillivirus | Measles virus | | | | | | |
| Orthorubulavirus | Mumps virus | | | | | | |
| HPIV-2 | | | | | | |
| HPIV-4 | | | | | | |
| Respirovirus | HPIV-1 | | | | | | |
| HPIV-3 | | | | | | |
| Henipavirus | Nipah virus | | | | | | |
| Hendra virus | | | | | | |
| Pneumoviridae | Orthopneumovirus | RSV-A | | | | | | |
| RSV-B | | | | | | |
| Metapneumovirus | hMPV-A | | | | | | |
| hMPV-B | | | | | | |
| Rhabdoviridae | Lyssavirus | Rabies virus | | | | | | |
| Filoviridae | Orthoebolavirus | Ebola virus | | | | | | |
| Sudan virus | | | | | | |
| Bundibugyo virus | | | | | | |
| Orthomarburgvirus | Marburg virus | | | | | | |
| Ravn virus | | | | | | |
| Arenaviridae | Mammarenavirus | Lassa virus | | | | | | |
| LCMV | | | | | | |
| Junin virus | | | | | | |
| Machupo virus | | | | | | |
| Hantaviridae | Orthohantavirus | Hantaan virus | | | | | | |
| Sin Nombre virus | | | | | | |
| Andes virus | | | | | | |
| Nairoviridae | Orthonairovirus | CCHF virus | | | | | | |
| Phenuiviridae | Phlebovirus | Rift Valley fever virus | | | | | | |
| Sandfly fever Naples virus | | | | | | |
| Sandfly fever Sicilian virus | | | | | | |
| Bandavirus | SFTS virus | | | | | | |
| Heartland virus | | | | | | |
| Peribunyaviridae | Orthobunyavirus | La Crosse virus | | | | | | |
| Oropouche virus | | | | | | |
| RT / dsRNA / Ribozyviria |
| Retroviridae | Lentivirus | HIV-1 | | | | | | |
| HIV-2 | | | | | | |
| Deltaretrovirus | HTLV-1 | | | | | | |
| HTLV-2 | | | | | | |
| Sedoreoviridae | Rotavirus | Rotavirus A | | | | | | |
| Rotavirus B | | | | | | |
| Rotavirus C | | | | | | |
| Kolmioviridae | Deltavirus | HDV | | | | | | |